Publications

(2022). Identification of shared and disease-specific host gene–microbiome associations across human diseases using multi-omic integration. Nature Microbiology, 7, 780–795.

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(2020). Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome. Cell (182:6).

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(2020). Interactions between the gut microbiome and host gene regulation in cystic fibrosis. Genome Medicine (12:12).

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(2019). Population dynamics of the human gut microbiome: change is the only constant. Genome Biology (20:150).

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(2018). Gut microbiota diversity across ethnicities in the United States. PLoS Biology (20:150).

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(2018). Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers. Genome Medicine (20:150).

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(2018). Colorectal cancer mutational profiles correlate with defined microbial communities in the tumor microenvironment. PLoS genetics (14:6).

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(2017). HOMINID: A framework for identifying associations between host genetic variation and microbiome composition. GigaScience (6:12).

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(2015). A Semantic Web-based System for Mining Genetic Mutations in Cancer Clinical Trials. AMIA Summits on Translational Science Proceedings (pp. 142-146).

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(2014). Partitioning OWL knowledge bases for parallel reasoning. IEEE International Conference on Semantic Computing, CA (pp.108-115).

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